Variant report

Variant	rs60616512
Chromosome Location	chr3:160826925-160826926
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr3:160826502-160826965	HCT-116	colon:	n/a	chr3:160826803-160826811 chr3:160826801-160826813
2	FOS	chr3:160826650-160826956	MCF10A-Er-Src	breast:	n/a	chr3:160826803-160826811 chr3:160826801-160826813
3	FOS	chr3:160826635-160826965	MCF10A-Er-Src	breast:	n/a	chr3:160826803-160826811 chr3:160826801-160826813
4	FOS	chr3:160826629-160826968	MCF10A-Er-Src	breast:	n/a	chr3:160826803-160826811 chr3:160826801-160826813

No.	Distal block	Cell Line	Cell type
1	chr3:160821182..160827138-chr3:160937374..160941314,7	MCF-7	breast:
2	chr3:160825465..160827951-chr3:160887384..160889097,2	MCF-7	breast:
3	chr3:160826732..160829358-chr3:160938079..160940393,2	K562	blood:

Variant related genes	Relation type
B3GALNT1	TF binding region
ENSG00000169251	Chromatin interaction
ENSG00000271052	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34049656	1.00[AFR][1000 genomes]
rs34112645	1.00[AFR][1000 genomes]
rs35064686	1.00[AFR][1000 genomes]
rs59176805	0.91[AFR][1000 genomes]
rs60488513	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877705	chr3:160818188-160836006	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877707	chr3:160820175-160836006	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160823200-160832800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160823400-160828800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:160823400-160829600	Weak transcription	Aorta	Aorta
4	chr3:160823600-160828200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:160823600-160829200	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:160823800-160828200	Weak transcription	Right Ventricle	heart
7	chr3:160823800-160830400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:160824000-160827000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:160824200-160830800	Weak transcription	Ovary	ovary
10	chr3:160825200-160827000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:160825200-160827200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:160825600-160827400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:160825800-160827200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:160826000-160827400	Enhancers	HMEC	breast
15	chr3:160826200-160827200	Enhancers	NHDF-Ad	bronchial
16	chr3:160826200-160829000	Weak transcription	Fetal Heart	heart
17	chr3:160826400-160827000	Enhancers	Hela-S3	cervix
18	chr3:160826600-160827000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:160826600-160827000	Enhancers	HSMM	muscle
20	chr3:160826600-160827400	Enhancers	NHEK	skin
21	chr3:160826800-160827200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:160826800-160827200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:160826800-160834400	Weak transcription	Left Ventricle	heart

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