Variant report

Variant	rs6049862
Chromosome Location	chr20:24657253-24657254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58092676	0.86[AFR][1000 genomes]
rs6036879	0.84[AFR][1000 genomes]
rs6049841	0.86[AFR][1000 genomes]
rs6049852	0.87[AFR][1000 genomes]
rs6049867	0.87[AFR][1000 genomes]
rs6049875	0.84[AFR][1000 genomes]
rs73331312	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524920	chr20:24639916-24683554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1061537	chr20:24643869-24683649	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv585744	chr20:24647725-24685440	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24643400-24661400	Weak transcription	Right Atrium	heart
2	chr20:24646600-24657400	Weak transcription	Brain Substantia Nigra	brain
3	chr20:24646800-24657400	Weak transcription	Brain Angular Gyrus	brain
4	chr20:24651800-24659000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:24653800-24658000	Weak transcription	Thymus	Thymus
6	chr20:24654000-24660600	Weak transcription	Fetal Thymus	thymus
7	chr20:24654400-24658400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr20:24655600-24658800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24657200-24657600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr20:24657200-24657800	Enhancers	Gastric	stomach
11	chr20:24657200-24658200	Enhancers	Brain Cingulate Gyrus	brain
12	chr20:24657200-24658200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr20:24657200-24658400	Enhancers	Brain Anterior Caudate	brain
14	chr20:24657200-24658600	Enhancers	Brain Hippocampus Middle	brain
15	chr20:24657200-24658800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links