Variant report

Variant	rs6049932
Chromosome Location	chr20:24718934-24718935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1883922	1.00[ASN][1000 genomes]
rs2253628	1.00[ASN][1000 genomes]
rs226680	1.00[JPT][hapmap]
rs226681	1.00[JPT][hapmap]
rs2424646	1.00[ASN][1000 genomes]
rs2424649	1.00[ASN][1000 genomes]
rs2424650	1.00[ASN][1000 genomes]
rs2424661	1.00[ASN][1000 genomes]
rs2424662	1.00[ASN][1000 genomes]
rs2424663	1.00[ASN][1000 genomes]
rs2424664	1.00[ASN][1000 genomes]
rs2424665	1.00[ASN][1000 genomes]
rs2424666	1.00[ASN][1000 genomes]
rs2424667	1.00[ASN][1000 genomes]
rs2424668	1.00[ASN][1000 genomes]
rs2424669	1.00[ASN][1000 genomes]
rs2424670	0.86[ASN][1000 genomes]
rs2424671	0.86[ASN][1000 genomes]
rs2424672	0.86[ASN][1000 genomes]
rs2424673	0.86[ASN][1000 genomes]
rs2424674	0.86[ASN][1000 genomes]
rs2424675	0.86[ASN][1000 genomes]
rs4813530	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4815307	1.00[ASN][1000 genomes]
rs6049931	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049946	1.00[ASN][1000 genomes]
rs6049976	1.00[JPT][hapmap]
rs6049978	1.00[JPT][hapmap]
rs6106942	1.00[ASN][1000 genomes]
rs971957	1.00[ASN][1000 genomes]
rs974647	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24715200-24719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24716200-24723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:24717000-24719800	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:24717000-24719800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr20:24717400-24727600	Enhancers	Fetal Thymus	thymus
6	chr20:24718200-24723400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr20:24718400-24719000	Genic enhancers	Thymus	Thymus
8	chr20:24718400-24723800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr20:24718600-24719000	Enhancers	Spleen	Spleen

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