Variant report

Variant	rs60501697
Chromosome Location	chr6:54718692-54718693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58220815	1.00[AMR][1000 genomes]
rs73434424	1.00[AMR][1000 genomes]
rs73439707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446387	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54712600-54725000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:54713200-54720800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:54713200-54721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:54713200-54725600	Weak transcription	Gastric	stomach
5	chr6:54713400-54720800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:54713400-54720800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:54713400-54726400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:54714800-54720400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:54715400-54719400	Weak transcription	HMEC	breast
10	chr6:54715400-54720800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
12	chr6:54717000-54720000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:54717200-54719400	Strong transcription	NHEK	skin
14	chr6:54717400-54718800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:54717400-54720400	Weak transcription	Stomach Mucosa	stomach
16	chr6:54717600-54720400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:54718600-54720200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:54718600-54720400	Weak transcription	Fetal Intestine Large	intestine
19	chr6:54718600-54720800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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