Variant report

Variant	rs73446387
Chromosome Location	chr6:54708784-54708785
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56795368	1.00[AMR][1000 genomes]
rs57636914	1.00[AMR][1000 genomes]
rs59660161	1.00[AMR][1000 genomes]
rs60386424	1.00[AMR][1000 genomes]
rs60501697	0.94[AFR][1000 genomes]
rs73430615	1.00[AMR][1000 genomes]
rs73430643	1.00[AMR][1000 genomes]
rs73439707	0.87[AFR][1000 genomes]
rs73448022	1.00[AMR][1000 genomes]
rs73448026	1.00[AMR][1000 genomes]
rs73448051	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54707200-54710800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:54707400-54709200	Weak transcription	HMEC	breast
3	chr6:54707400-54710200	Weak transcription	NHEK	skin
4	chr6:54707400-54710800	Weak transcription	Placenta	Placenta
5	chr6:54707800-54709000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:54708600-54708800	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:54708600-54709000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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