Variant report

Variant	rs73430615
Chromosome Location	chr6:54664580-54664581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56795368	1.00[AMR][1000 genomes]
rs57636914	1.00[AMR][1000 genomes]
rs59660161	1.00[AMR][1000 genomes]
rs60386424	1.00[AMR][1000 genomes]
rs73430643	1.00[AMR][1000 genomes]
rs73438016	1.00[AMR][1000 genomes]
rs73438033	1.00[AMR][1000 genomes]
rs73446387	1.00[AMR][1000 genomes]
rs73448022	1.00[AMR][1000 genomes]
rs73448026	1.00[AMR][1000 genomes]
rs73448051	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3473998	chr6:54662415-54666050	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3473999	chr6:54662522-54665922	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3474000	chr6:54662536-54665920	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv603129	chr6:54662538-54665574	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv10682	chr6:54662548-54665910	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv603130	chr6:54662944-54665729	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv603131	chr6:54663453-54665296	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv603132	chr6:54663453-54665574	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv603133	chr6:54663453-54665729	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54653200-54667800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:54663000-54667800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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