Variant report

Variant	rs73438016
Chromosome Location	chr6:54485523-54485524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56795368	1.00[AMR][1000 genomes]
rs57636914	1.00[AMR][1000 genomes]
rs60386424	1.00[AMR][1000 genomes]
rs73430395	1.00[AMR][1000 genomes]
rs73430615	1.00[AMR][1000 genomes]
rs73438033	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448022	1.00[AMR][1000 genomes]
rs73448026	1.00[AMR][1000 genomes]
rs73448051	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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