Variant report

Variant	rs60386424
Chromosome Location	chr6:54641519-54641520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56795368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57636914	1.00[AMR][1000 genomes]
rs59660161	1.00[AMR][1000 genomes]
rs73430615	1.00[AMR][1000 genomes]
rs73430643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73438016	1.00[AMR][1000 genomes]
rs73438033	1.00[AMR][1000 genomes]
rs73446387	1.00[AMR][1000 genomes]
rs73448022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448051	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54641400-54642200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:54641400-54642200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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