Variant report

Variant	rs6050302
Chromosome Location	chr20:25057283-25057284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6037016	1.00[AFR][1000 genomes]
rs6050417	1.00[YRI][hapmap]
rs8116161	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25046800-25057400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr20:25046800-25058200	Weak transcription	Right Atrium	heart
3	chr20:25055400-25057400	Enhancers	A549	lung
4	chr20:25055600-25057400	Weak transcription	Esophagus	oesophagus
5	chr20:25056800-25057400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
6	chr20:25056800-25058200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:25056800-25058600	Enhancers	Gastric	stomach
8	chr20:25057200-25057400	Enhancers	Brain Substantia Nigra	brain
9	chr20:25057200-25058000	Enhancers	Hela-S3	cervix
10	chr20:25057200-25058200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:25057200-25058200	Enhancers	Liver	Liver
12	chr20:25057200-25058200	Enhancers	Pancreas	Pancrea
13	chr20:25057200-25058200	Enhancers	HMEC	breast
14	chr20:25057200-25058200	Bivalent Enhancer	NHEK	skin
15	chr20:25057200-25058400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr20:25057200-25058800	Bivalent Enhancer	Thymus	Thymus
17	chr20:25057200-25060600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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