Variant report

Variant	rs8116161
Chromosome Location	chr20:24954637-24954638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6050302	1.00[YRI][hapmap]
rs7261316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7262958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8113883	1.00[AMR][1000 genomes]
rs8117263	1.00[AMR][1000 genomes]
rs8119761	0.83[AMR][1000 genomes]
rs8121187	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2762068	chr20:24908860-24974986	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv585745	chr20:24932028-25007089	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24935200-24957600	Strong transcription	Liver	Liver
2	chr20:24935200-24971800	Weak transcription	K562	blood
3	chr20:24936000-24955600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr20:24936400-24954800	Strong transcription	Spleen	Spleen
5	chr20:24936400-24956000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr20:24936600-24954800	Strong transcription	Brain Anterior Caudate	brain
7	chr20:24936600-24954800	Strong transcription	Thymus	Thymus
8	chr20:24936800-24954800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr20:24936800-24955000	Strong transcription	Lung	lung
10	chr20:24936800-24955400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr20:24936800-24955800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr20:24937000-24955000	Strong transcription	Dnd41	blood
13	chr20:24937200-24954800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr20:24937200-24955000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr20:24937400-24957200	Strong transcription	HepG2	liver
16	chr20:24937800-24954800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr20:24937800-24955000	Strong transcription	Primary T cells from cord blood	blood
18	chr20:24938000-24954800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr20:24938000-24954800	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr20:24938200-24955600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr20:24938400-24954800	Strong transcription	Fetal Thymus	thymus
22	chr20:24939400-24954800	Strong transcription	Right Ventricle	heart
23	chr20:24940200-24954800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr20:24940200-24955000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr20:24942000-24972400	Weak transcription	Fetal Heart	heart
26	chr20:24942800-24961600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr20:24943200-24954800	Strong transcription	Aorta	Aorta
28	chr20:24943200-24955400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr20:24943200-24965000	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr20:24944400-24955800	Strong transcription	Primary hematopoietic stem cells	blood
31	chr20:24944400-24958200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr20:24944800-24960600	Weak transcription	Stomach Mucosa	stomach
33	chr20:24946200-24954800	Strong transcription	Brain Angular Gyrus	brain
34	chr20:24948000-24954800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr20:24948600-24955000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr20:24949800-24955000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr20:24950000-24966400	Weak transcription	Small Intestine	intestine
38	chr20:24950800-24961000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr20:24951400-24954800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr20:24951600-24960400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
41	chr20:24952000-24955000	Strong transcription	A549	lung
42	chr20:24952200-24954800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr20:24952600-24954800	Genic enhancers	Placenta	Placenta
44	chr20:24952600-24954800	Strong transcription	Psoas Muscle	Psoas
45	chr20:24952600-24957200	Strong transcription	Primary B cells from cord blood	blood
46	chr20:24952800-24954800	Strong transcription	Brain Hippocampus Middle	brain
47	chr20:24952800-24961000	Weak transcription	NHDF-Ad	bronchial
48	chr20:24953200-24955400	Strong transcription	Hela-S3	cervix
49	chr20:24953200-24962200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr20:24953400-24954800	Strong transcription	Adipose Nuclei	Adipose

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