Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166710025..166712273-chr6:166716005..166718139,2	K562	blood:
2	chr6:166709970..166712406-chr6:166716038..166718668,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1599840	1.00[ASN][1000 genomes]
rs4293980	1.00[ASN][1000 genomes]
rs56142231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6912994	0.89[ASN][1000 genomes]
rs6917504	0.89[ASN][1000 genomes]
rs6933888	0.89[ASN][1000 genomes]
rs7738161	1.00[ASN][1000 genomes]
rs7742545	1.00[ASN][1000 genomes]
rs7749004	0.89[ASN][1000 genomes]
rs7751436	1.00[ASN][1000 genomes]
rs7753337	0.89[ASN][1000 genomes]
rs7753525	0.89[ASN][1000 genomes]
rs7754657	1.00[ASN][1000 genomes]
rs7756752	1.00[ASN][1000 genomes]
rs7756887	0.90[ASN][1000 genomes]
rs7757224	1.00[ASN][1000 genomes]
rs7766820	0.89[ASN][1000 genomes]
rs7767290	0.89[ASN][1000 genomes]
rs998648	1.00[ASN][1000 genomes]
rs998649	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166708200-166712000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:166710600-166712000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:166710800-166711600	Active TSS	Brain Cingulate Gyrus	brain
4	chr6:166710800-166712000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:166711000-166712000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:166711000-166712000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:166711000-166714400	Enhancers	Brain Hippocampus Middle	brain

Quick Search: