Variant report

Variant	rs6912994
Chromosome Location	chr6:166716585-166716586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1599840	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4293980	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs56142231	0.89[ASN][1000 genomes]
rs60506307	0.89[ASN][1000 genomes]
rs6917504	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6933888	1.00[ASN][1000 genomes]
rs7738161	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7742545	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7749004	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7751436	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7753337	1.00[ASN][1000 genomes]
rs7753525	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7754657	0.89[ASN][1000 genomes]
rs7756752	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7756887	0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7757224	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7766820	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7767290	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs998648	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs998649	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166713200-166716600	Enhancers	Liver	Liver
2	chr6:166714400-166717800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:166715400-166718200	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:166715600-166719400	Enhancers	Brain Hippocampus Middle	brain
5	chr6:166716200-166717600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:166716400-166716600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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