Variant report

Variant	rs60540251
Chromosome Location	chr15:62131423-62131424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13329329	0.89[EUR][1000 genomes]
rs13329639	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17238245	0.89[EUR][1000 genomes]
rs17303989	0.89[EUR][1000 genomes]
rs28367150	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28403096	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28408506	0.89[EUR][1000 genomes]
rs28411845	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28440175	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28493143	0.83[EUR][1000 genomes]
rs28541511	0.83[EUR][1000 genomes]
rs28613580	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28650099	0.89[EUR][1000 genomes]
rs28654580	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28664955	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28708564	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28718088	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28720854	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28721460	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28758709	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28783433	0.83[EUR][1000 genomes]
rs28810829	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28814609	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784631	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4774423	0.94[EUR][1000 genomes]
rs725174	0.83[EUR][1000 genomes]
rs73414700	0.89[EUR][1000 genomes]
rs73416527	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73428629	0.87[AFR][1000 genomes]
rs73428651	0.89[AFR][1000 genomes]
rs73428661	0.83[AFR][1000 genomes]
rs73430416	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8027343	0.83[EUR][1000 genomes]
rs8040911	0.83[EUR][1000 genomes]
rs8042267	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9920006	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9920015	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9920256	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9920390	0.89[EUR][1000 genomes]
rs9920581	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62128200-62132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links