Variant report

Variant	rs605413
Chromosome Location	chr3:109647620-109647621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs2682531	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2693620	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2693635	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2700255	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2700258	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs603148	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs604438	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs604985	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs605347	0.89[AMR][1000 genomes]
rs605451	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs605810	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs606216	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs612254	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs614450	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs614804	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs617517	0.83[ASN][1000 genomes]
rs618829	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs623226	0.83[ASN][1000 genomes]
rs626977	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs627434	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs632144	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs642983	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs654027	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs654076	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs654095	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs657025	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs657834	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs664861	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs666129	0.83[ASN][1000 genomes]
rs666533	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs666674	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs667338	0.83[ASN][1000 genomes]
rs671574	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs672489	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs673959	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs686071	0.83[AMR][1000 genomes]
rs686207	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs687955	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009550	chr3:109577315-109795453	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1839660	chr3:109591203-109678542	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv829666	chr3:109593745-109768652	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2754434	chr3:109604310-109777310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv236806	chr3:109638554-109647641	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv963568	chr3:109644954-109655353	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv16913	chr3:109646932-109647971	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109647000-109649000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:109647000-109649400	Enhancers	A549	lung
3	chr3:109647000-109656000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:109647200-109649400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:109647200-109649400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:109647200-109649400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:109647200-109649400	Weak transcription	NH-A	brain
8	chr3:109647200-109651000	Weak transcription	NHEK	skin
9	chr3:109647400-109648800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:109647400-109649000	Weak transcription	Muscle Satellite Cultured Cells	--

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