Variant report

Variant	rs60541721
Chromosome Location	chr3:61046482-61046483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11915333	1.00[EUR][1000 genomes]
rs11918601	1.00[EUR][1000 genomes]
rs11921624	1.00[EUR][1000 genomes]
rs11923043	1.00[EUR][1000 genomes]
rs17064511	1.00[EUR][1000 genomes]
rs59745831	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61215023	1.00[EUR][1000 genomes]
rs72875946	1.00[AMR][1000 genomes]
rs72875951	1.00[AMR][1000 genomes]
rs72875954	1.00[AFR][1000 genomes]
rs72877847	1.00[EUR][1000 genomes]
rs72877848	1.00[EUR][1000 genomes]
rs72877853	1.00[EUR][1000 genomes]
rs72877855	1.00[EUR][1000 genomes]
rs72877857	1.00[EUR][1000 genomes]
rs72877859	1.00[EUR][1000 genomes]
rs72877864	1.00[EUR][1000 genomes]
rs72877876	1.00[EUR][1000 genomes]
rs72877894	1.00[EUR][1000 genomes]
rs72879804	1.00[EUR][1000 genomes]
rs72879816	1.00[EUR][1000 genomes]
rs72879862	1.00[EUR][1000 genomes]
rs72879870	1.00[EUR][1000 genomes]
rs72879875	1.00[EUR][1000 genomes]
rs72879891	1.00[EUR][1000 genomes]
rs72881709	1.00[EUR][1000 genomes]
rs72881734	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv34680	chr3:60983280-61052979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756992	chr3:60993915-61052642	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv876865	chr3:60996220-61046955	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv460574	chr3:61040284-61054345	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv590410	chr3:61040284-61054345	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61033600-61066600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:61045400-61046600	Enhancers	Pancreas	Pancrea
3	chr3:61045400-61047000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:61046000-61046800	Enhancers	Fetal Lung	lung
5	chr3:61046000-61046800	Enhancers	NHEK	skin
6	chr3:61046000-61047000	Enhancers	HepG2	liver
7	chr3:61046200-61046800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:61046200-61046800	Enhancers	Fetal Brain Male	brain
9	chr3:61046200-61047000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:61046400-61047000	Enhancers	Brain Cingulate Gyrus	brain

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