Variant report

Variant	rs72877864
Chromosome Location	chr3:61080589-61080590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11915333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17064511	1.00[EUR][1000 genomes]
rs3921997	1.00[EUR][1000 genomes]
rs58763528	1.00[EUR][1000 genomes]
rs59745831	1.00[EUR][1000 genomes]
rs60366187	1.00[EUR][1000 genomes]
rs60541721	1.00[EUR][1000 genomes]
rs61215023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877862	1.00[AMR][1000 genomes]
rs72877876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879870	1.00[EUR][1000 genomes]
rs72879875	1.00[EUR][1000 genomes]
rs72879891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72881709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72881734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72881802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623666	1.00[EUR][1000 genomes]
rs7629722	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2756993	chr3:61064432-61119923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61080200-61080800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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