Variant report

Variant	rs72877862
Chromosome Location	chr3:61077039-61077040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11915333	1.00[AMR][1000 genomes]
rs11918601	1.00[AMR][1000 genomes]
rs11921624	1.00[AMR][1000 genomes]
rs11923043	1.00[AMR][1000 genomes]
rs61215023	1.00[AMR][1000 genomes]
rs72877847	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877853	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877857	1.00[AMR][1000 genomes]
rs72877859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72877864	1.00[AMR][1000 genomes]
rs72877876	1.00[AMR][1000 genomes]
rs72877894	1.00[AMR][1000 genomes]
rs72879804	1.00[AMR][1000 genomes]
rs72879816	1.00[AMR][1000 genomes]
rs72879862	1.00[AMR][1000 genomes]
rs72879891	1.00[AMR][1000 genomes]
rs72881709	1.00[AMR][1000 genomes]
rs72881734	1.00[AMR][1000 genomes]
rs72881802	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv948633	chr3:60993915-61171279	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv834710	chr3:60995631-61148157	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757873	chr3:61019003-61185558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv876866	chr3:61054494-61310328	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2756993	chr3:61064432-61119923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61067400-61077200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:61067400-61079200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:61067600-61078600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:61076400-61077200	Enhancers	Fetal Kidney	kidney
5	chr3:61076600-61078600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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