Variant report

Variant	rs60542605
Chromosome Location	chr6:110370894-110370895
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1381689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4636065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56138638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6942351	1.00[AMR][1000 genomes]
rs73765638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73765647	1.00[AFR][1000 genomes]
rs73765661	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3475151	chr6:110369588-110371499	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3475153	chr6:110369588-110371499	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110370800-110371200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:110370800-110371200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:110370800-110371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:110370800-110371800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links