Variant report

Variant	rs73765647
Chromosome Location	chr6:110386110-110386111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1381689	1.00[AFR][1000 genomes]
rs4636065	1.00[AFR][1000 genomes]
rs56138638	1.00[AFR][1000 genomes]
rs60115070	1.00[AFR][1000 genomes]
rs60542605	1.00[AFR][1000 genomes]
rs73765638	1.00[AFR][1000 genomes]
rs73765640	1.00[AFR][1000 genomes]
rs73765642	0.89[AFR][1000 genomes]
rs73765645	1.00[AFR][1000 genomes]
rs73765661	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110383800-110386200	Enhancers	Fetal Thymus	thymus
3	chr6:110384000-110386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:110384000-110387600	Enhancers	Thymus	Thymus
5	chr6:110384400-110387200	Enhancers	Primary B cells from cord blood	blood
6	chr6:110384400-110387200	Enhancers	GM12878-XiMat	blood
7	chr6:110384600-110387600	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:110385200-110389000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:110385200-110389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:110385200-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:110385400-110388600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:110385800-110386200	Bivalent Enhancer	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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