Variant report

Variant	rs60545964
Chromosome Location	chr16:75718428-75718429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55907643	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56146953	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56235797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58718680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59619831	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59634477	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60768865	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61675014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7191923	1.00[AMR][1000 genomes]
rs7192136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73613298	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615053	1.00[AMR][1000 genomes]
rs73615069	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615080	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615239	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615275	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058139	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	esv3390407	chr16:75701870-75751074	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75693800-75723200	Weak transcription	Ovary	ovary
2	chr16:75713600-75718800	Weak transcription	Spleen	Spleen
3	chr16:75714600-75720000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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