Variant report

Variant	rs73615275
Chromosome Location	chr16:75785623-75785624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55907643	1.00[AMR][1000 genomes]
rs56146953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56235797	1.00[AMR][1000 genomes]
rs58718680	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59619831	1.00[AMR][1000 genomes]
rs59634477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60545964	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60768865	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61675014	1.00[AMR][1000 genomes]
rs7191923	1.00[AMR][1000 genomes]
rs7192136	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73613298	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615053	1.00[AMR][1000 genomes]
rs73615069	1.00[AMR][1000 genomes]
rs73615080	1.00[AMR][1000 genomes]
rs73615207	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615239	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv906930	chr16:75728261-75872464	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75784600-75787200	Weak transcription	Colonic Mucosa	Colon
2	chr16:75784800-75786000	Weak transcription	Pancreas	Pancrea
3	chr16:75785200-75787200	Weak transcription	Fetal Intestine Small	intestine
4	chr16:75785600-75787400	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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