Variant report

Variant	rs60567357
Chromosome Location	chr7:120220355-120220356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs57062655	1.00[AMR][1000 genomes]
rs57411631	1.00[AMR][1000 genomes]
rs57417999	1.00[AMR][1000 genomes]
rs57687096	1.00[AMR][1000 genomes]
rs58100103	1.00[AMR][1000 genomes]
rs58972047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61104791	1.00[AMR][1000 genomes]
rs61430585	1.00[AMR][1000 genomes]
rs73423706	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431954	1.00[AMR][1000 genomes]
rs73431966	1.00[AMR][1000 genomes]
rs73431968	1.00[AMR][1000 genomes]
rs73431971	1.00[AMR][1000 genomes]
rs73431979	1.00[AMR][1000 genomes]
rs73431984	1.00[AMR][1000 genomes]
rs73433807	1.00[AMR][1000 genomes]
rs73433823	1.00[AMR][1000 genomes]
rs73433825	1.00[AMR][1000 genomes]
rs73433829	1.00[AMR][1000 genomes]
rs73433838	1.00[AMR][1000 genomes]
rs73433844	1.00[AMR][1000 genomes]
rs73433850	1.00[AMR][1000 genomes]
rs73433858	1.00[AMR][1000 genomes]
rs73433862	1.00[AMR][1000 genomes]
rs73433873	1.00[AMR][1000 genomes]
rs73433887	1.00[AMR][1000 genomes]
rs73433890	1.00[AMR][1000 genomes]
rs73433898	1.00[AMR][1000 genomes]
rs73435825	1.00[AMR][1000 genomes]
rs73435842	1.00[AMR][1000 genomes]
rs73435846	1.00[AMR][1000 genomes]
rs73435868	1.00[AMR][1000 genomes]
rs73435875	1.00[AMR][1000 genomes]
rs73435881	1.00[AMR][1000 genomes]
rs73437806	1.00[AMR][1000 genomes]
rs73437842	1.00[AMR][1000 genomes]
rs73441827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120200400-120223000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120220000-120220800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:120220200-120221000	Enhancers	Fetal Brain Female	brain
4	chr7:120220200-120227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links