Variant report

Variant	rs73433838
Chromosome Location	chr7:120047069-120047070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs57062655	1.00[AMR][1000 genomes]
rs57411631	1.00[AMR][1000 genomes]
rs57417999	1.00[AMR][1000 genomes]
rs57687096	1.00[AMR][1000 genomes]
rs58086739	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58100103	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58972047	1.00[AMR][1000 genomes]
rs59574653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60567357	1.00[AMR][1000 genomes]
rs60963172	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61008628	0.85[AFR][1000 genomes]
rs61104791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61430585	1.00[AMR][1000 genomes]
rs61679179	1.00[AMR][1000 genomes]
rs73423706	1.00[AMR][1000 genomes]
rs73429960	1.00[AMR][1000 genomes]
rs73431913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431937	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431954	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431979	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431984	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433807	1.00[AMR][1000 genomes]
rs73433823	1.00[AMR][1000 genomes]
rs73433825	1.00[AMR][1000 genomes]
rs73433829	1.00[AMR][1000 genomes]
rs73433844	1.00[AMR][1000 genomes]
rs73433850	1.00[AMR][1000 genomes]
rs73433858	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433862	1.00[AMR][1000 genomes]
rs73433873	1.00[AMR][1000 genomes]
rs73433887	1.00[AMR][1000 genomes]
rs73433890	1.00[AMR][1000 genomes]
rs73433898	1.00[AMR][1000 genomes]
rs73435825	1.00[AMR][1000 genomes]
rs73435842	1.00[AMR][1000 genomes]
rs73435846	1.00[AMR][1000 genomes]
rs73435868	1.00[AMR][1000 genomes]
rs73435875	1.00[AMR][1000 genomes]
rs73435881	1.00[AMR][1000 genomes]
rs73437806	1.00[AMR][1000 genomes]
rs73437842	1.00[AMR][1000 genomes]
rs73441827	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120043200-120075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120044600-120049400	ZNF genes & repeats	GM12878-XiMat	blood
3	chr7:120046600-120047600	Enhancers	Hela-S3	cervix
4	chr7:120046800-120047600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:120046800-120047600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:120046800-120047600	Enhancers	NHEK	skin

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