Variant report

Variant	rs60963172
Chromosome Location	chr7:119929891-119929892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs57062655	1.00[AMR][1000 genomes]
rs57411631	1.00[AMR][1000 genomes]
rs57417999	1.00[AMR][1000 genomes]
rs57687096	1.00[AMR][1000 genomes]
rs58086739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58100103	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59574653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61008628	1.00[AFR][1000 genomes]
rs61104791	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61430585	1.00[AMR][1000 genomes]
rs61679179	1.00[AMR][1000 genomes]
rs73429960	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431916	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431930	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431937	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431947	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431954	1.00[AMR][1000 genomes]
rs73431966	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431968	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431971	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431979	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73431984	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433807	1.00[AMR][1000 genomes]
rs73433823	1.00[AMR][1000 genomes]
rs73433825	1.00[AMR][1000 genomes]
rs73433829	1.00[AMR][1000 genomes]
rs73433838	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433844	1.00[AMR][1000 genomes]
rs73433850	1.00[AMR][1000 genomes]
rs73433858	1.00[AMR][1000 genomes]
rs73433862	1.00[AMR][1000 genomes]
rs73433873	1.00[AMR][1000 genomes]
rs73433887	1.00[AMR][1000 genomes]
rs73433890	1.00[AMR][1000 genomes]
rs73433898	1.00[AMR][1000 genomes]
rs73435825	1.00[AMR][1000 genomes]
rs73435842	1.00[AMR][1000 genomes]
rs73435846	1.00[AMR][1000 genomes]
rs73435868	1.00[AMR][1000 genomes]
rs73435875	1.00[AMR][1000 genomes]
rs73435881	1.00[AMR][1000 genomes]
rs73437806	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119929000-119931000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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