Variant report

Variant	rs60569899
Chromosome Location	chr1:192606687-192606688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10921176	1.00[EUR][1000 genomes]
rs4325109	1.00[EUR][1000 genomes]
rs4562598	1.00[EUR][1000 genomes]
rs57851136	1.00[EUR][1000 genomes]
rs73060132	1.00[EUR][1000 genomes]
rs73060134	1.00[EUR][1000 genomes]
rs73060137	1.00[EUR][1000 genomes]
rs73060138	1.00[EUR][1000 genomes]
rs73060140	1.00[EUR][1000 genomes]
rs73060146	1.00[EUR][1000 genomes]
rs73060161	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73060162	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73060163	1.00[EUR][1000 genomes]
rs73060166	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73060168	1.00[AFR][1000 genomes]
rs74130669	1.00[EUR][1000 genomes]
rs7535318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192599000-192608200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:192600200-192620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:192601600-192607000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:192602800-192608200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:192603400-192607600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:192603400-192608800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:192603400-192608800	Weak transcription	HSMMtube	muscle
8	chr1:192604000-192608400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:192604000-192609000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:192604400-192608200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:192605400-192609200	Weak transcription	Fetal Heart	heart
12	chr1:192605600-192608000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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