Variant report

Variant	rs73060137
Chromosome Location	chr1:192573136-192573137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10921176	1.00[EUR][1000 genomes]
rs4325109	1.00[EUR][1000 genomes]
rs4562598	1.00[EUR][1000 genomes]
rs57851136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60569899	1.00[EUR][1000 genomes]
rs73060132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060140	1.00[EUR][1000 genomes]
rs73060146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060161	1.00[EUR][1000 genomes]
rs73060162	1.00[EUR][1000 genomes]
rs73060163	1.00[EUR][1000 genomes]
rs73060166	1.00[EUR][1000 genomes]
rs74130669	1.00[EUR][1000 genomes]
rs7535318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192570400-192573800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:192570600-192574600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:192571000-192574200	Weak transcription	Aorta	Aorta
4	chr1:192571000-192574200	Weak transcription	Fetal Heart	heart
5	chr1:192571200-192573800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:192571400-192573800	Weak transcription	HSMM	muscle
7	chr1:192572400-192576200	Enhancers	GM12878-XiMat	blood
8	chr1:192572400-192577600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:192572600-192578800	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:192572800-192576400	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links