Variant report

Variant	rs60574531
Chromosome Location	chr1:159049684-159049685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55636219	1.00[AMR][1000 genomes]
rs74122257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2473532	chr1:159049640-159051091	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159047000-159051000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:159048000-159051000	Weak transcription	NHDF-Ad	bronchial
4	chr1:159048000-159053600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:159048200-159053600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:159048400-159052400	Weak transcription	Primary B cells from cord blood	blood
7	chr1:159048800-159051200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:159049000-159052200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:159049400-159050000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:159049600-159049800	Enhancers	Osteobl	bone
11	chr1:159049600-159058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links