Variant report

Variant	rs74122257
Chromosome Location	chr1:159055207-159055208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55636219	1.00[AMR][1000 genomes]
rs60574531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159049600-159058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:159052400-159056400	Enhancers	Primary B cells from cord blood	blood
5	chr1:159053600-159055400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr1:159053600-159055600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr1:159053600-159055600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:159053600-159061400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:159054400-159056800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:159054600-159055400	Weak transcription	Placenta	Placenta
11	chr1:159055000-159057400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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