Variant report

Variant	rs60577390
Chromosome Location	chr2:191015755-191015756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10169078	1.00[EUR][1000 genomes]
rs11687019	1.00[EUR][1000 genomes]
rs13411862	1.00[EUR][1000 genomes]
rs4241289	1.00[EUR][1000 genomes]
rs55680126	1.00[EUR][1000 genomes]
rs55867429	1.00[EUR][1000 genomes]
rs58093950	1.00[EUR][1000 genomes]
rs73978912	1.00[EUR][1000 genomes]
rs73978915	1.00[EUR][1000 genomes]
rs73978917	1.00[EUR][1000 genomes]
rs73978921	1.00[EUR][1000 genomes]
rs73978923	1.00[EUR][1000 genomes]
rs73978929	1.00[EUR][1000 genomes]
rs73978930	1.00[EUR][1000 genomes]
rs73978935	1.00[EUR][1000 genomes]
rs785227	1.00[EUR][1000 genomes]
rs785249	1.00[EUR][1000 genomes]
rs785269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191015400-191023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:191015600-191015800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links