Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10169078	1.00[EUR][1000 genomes]
rs11687019	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13411862	1.00[EUR][1000 genomes]
rs4241289	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55680126	1.00[EUR][1000 genomes]
rs55867429	1.00[EUR][1000 genomes]
rs58093950	1.00[EUR][1000 genomes]
rs60577390	1.00[EUR][1000 genomes]
rs73978912	1.00[EUR][1000 genomes]
rs73978915	1.00[EUR][1000 genomes]
rs73978917	1.00[EUR][1000 genomes]
rs73978921	1.00[EUR][1000 genomes]
rs73978923	1.00[EUR][1000 genomes]
rs73978929	1.00[EUR][1000 genomes]
rs73978930	1.00[EUR][1000 genomes]
rs73978935	1.00[EUR][1000 genomes]
rs785219	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs785227	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs785249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs785250	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs785268	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191015400-191023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:191015800-191016200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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