The 2.0 version of rSNPBase

Variant report

Variant rs60577771
Chromosome Location chr19:38835965-38835966
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38828000-38838400 Weak transcription HSMMtube muscle
2 chr19:38828200-38836400 Weak transcription Brain Cingulate Gyrus brain
3 chr19:38828200-38836600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:38828200-38836800 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr19:38828200-38837000 Weak transcription Colon Smooth Muscle Colon
6 chr19:38828200-38837400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr19:38828200-38838000 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr19:38828200-38838200 Weak transcription Rectal Smooth Muscle rectum
9 chr19:38828200-38838400 Weak transcription Colonic Mucosa Colon
10 chr19:38828200-38838400 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr19:38828200-38839000 Weak transcription Brain Anterior Caudate brain
12 chr19:38828200-38840400 Weak transcription Left Ventricle heart
13 chr19:38828200-38841400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr19:38828200-38842000 Weak transcription Brain Angular Gyrus brain
15 chr19:38828200-38842600 Weak transcription Esophagus oesophagus
16 chr19:38828200-38844800 Weak transcription Brain Substantia Nigra brain
17 chr19:38828200-38852000 Weak transcription Right Atrium heart
18 chr19:38828400-38836200 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr19:38828400-38836800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr19:38828400-38837200 Weak transcription Primary B cells from peripheral blood blood
21 chr19:38828400-38837800 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr19:38828400-38838200 Weak transcription Adipose Nuclei Adipose
23 chr19:38828400-38839200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr19:38828400-38839600 Weak transcription Primary T cells from cord blood blood
25 chr19:38828400-38839800 Weak transcription Brain Inferior Temporal Lobe brain
26 chr19:38828400-38839800 Weak transcription Right Ventricle heart
27 chr19:38828400-38840000 Weak transcription iPS-15b Cell Line embryonic stem cell
28 chr19:38828600-38838800 Weak transcription Primary B cells from cord blood blood
29 chr19:38828600-38839000 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr19:38828600-38839600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr19:38828800-38837000 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr19:38829000-38838600 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr19:38829400-38836600 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr19:38829400-38839800 Weak transcription Primary T cells fromperipheralblood blood
35 chr19:38829600-38839400 Weak transcription Thymus Thymus
36 chr19:38830200-38844800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr19:38830400-38837800 Weak transcription Fetal Intestine Large intestine
38 chr19:38831600-38838200 Strong transcription Primary neutrophils fromperipheralblood blood
39 chr19:38832200-38836600 Strong transcription Fetal Stomach stomach
40 chr19:38832200-38838200 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr19:38832200-38840400 Weak transcription Stomach Smooth Muscle stomach
42 chr19:38833200-38837800 Strong transcription Fetal Intestine Small intestine
43 chr19:38833200-38838200 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr19:38833400-38836800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
45 chr19:38833800-38837800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr19:38833800-38838000 Weak transcription NHEK skin
47 chr19:38833800-38840400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr19:38834200-38836600 Weak transcription Aorta Aorta
49 chr19:38834200-38845000 Weak transcription Spleen Spleen
50 chr19:38835000-38836400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015