Variant report

Variant	rs6058010
Chromosome Location	chr20:29833535-29833536
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10084487	1.00[ASN][1000 genomes]
rs10084488	1.00[ASN][1000 genomes]
rs12329612	1.00[ASN][1000 genomes]
rs1923053	1.00[ASN][1000 genomes]
rs2143192	1.00[ASN][1000 genomes]
rs2424858	1.00[ASN][1000 genomes]
rs4564862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963102	1.00[ASN][1000 genomes]
rs57214825	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6057566	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6059071	1.00[ASN][1000 genomes]
rs6061021	0.84[AFR][1000 genomes]
rs60897953	1.00[ASN][1000 genomes]
rs6118879	1.00[ASN][1000 genomes]
rs6118896	1.00[ASN][1000 genomes]
rs6118901	1.00[ASN][1000 genomes]
rs6118990	1.00[ASN][1000 genomes]
rs6118991	1.00[ASN][1000 genomes]
rs6118993	1.00[ASN][1000 genomes]
rs6118994	1.00[ASN][1000 genomes]
rs6119014	1.00[ASN][1000 genomes]
rs6119018	1.00[ASN][1000 genomes]
rs6119036	1.00[ASN][1000 genomes]
rs6119037	1.00[ASN][1000 genomes]
rs6119038	1.00[ASN][1000 genomes]
rs6119130	1.00[ASN][1000 genomes]
rs6119317	1.00[ASN][1000 genomes]
rs6119387	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6119722	0.89[EUR][1000 genomes]
rs6120065	1.00[ASN][1000 genomes]
rs6120125	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6120227	0.95[EUR][1000 genomes]
rs6121224	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6121233	1.00[ASN][1000 genomes]
rs6121244	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67552179	1.00[ASN][1000 genomes]
rs7274062	1.00[ASN][1000 genomes]
rs73119512	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73238483	1.00[ASN][1000 genomes]
rs732860	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8117589	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3342568	chr20:29803909-29834289	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
2	esv3362807	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
3	esv3392375	chr20:29803909-29834289	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3412704	chr20:29803909-29834289	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	esv3445374	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
6	esv3451819	chr20:29803909-29834389	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv964448	chr20:29803909-29857200	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv585887	chr20:29804208-29833609	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv585888	chr20:29804208-29844859	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	esv1800744	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1806005	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1809844	chr20:29804293-29860684	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1821656	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv1829940	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv1836734	chr20:29804293-29860684	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv1839077	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1850349	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv2485082	chr20:29806791-29833789	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
19	nsv869384	chr20:29833386-30605088	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	419 gene(s)	inside rSNPs	diseases
20	nsv833951	chr20:29833448-29878205	Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr20:29833400-29835600	Weak transcription	Fetal Heart	heart
6	chr20:29833400-29839400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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