Variant report

Variant	rs6120125
Chromosome Location	chr20:29805820-29805821
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12329612	1.00[ASN][1000 genomes]
rs1923053	1.00[ASN][1000 genomes]
rs2143192	1.00[ASN][1000 genomes]
rs2424858	1.00[ASN][1000 genomes]
rs55963102	1.00[ASN][1000 genomes]
rs56047717	0.86[EUR][1000 genomes]
rs57214825	1.00[ASN][1000 genomes]
rs6057566	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058010	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6059071	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6060993	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6061021	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60897953	1.00[ASN][1000 genomes]
rs6118879	1.00[ASN][1000 genomes]
rs6118896	1.00[ASN][1000 genomes]
rs6118901	1.00[ASN][1000 genomes]
rs6118990	1.00[ASN][1000 genomes]
rs6118991	1.00[ASN][1000 genomes]
rs6118993	1.00[ASN][1000 genomes]
rs6118994	1.00[ASN][1000 genomes]
rs6119014	1.00[ASN][1000 genomes]
rs6119018	1.00[ASN][1000 genomes]
rs6119036	1.00[ASN][1000 genomes]
rs6119037	1.00[ASN][1000 genomes]
rs6119038	1.00[ASN][1000 genomes]
rs6119130	1.00[ASN][1000 genomes]
rs6119317	1.00[ASN][1000 genomes]
rs6119387	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6120065	1.00[ASN][1000 genomes]
rs6121224	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6121233	1.00[ASN][1000 genomes]
rs6121244	1.00[ASN][1000 genomes]
rs67552179	1.00[ASN][1000 genomes]
rs7274062	1.00[ASN][1000 genomes]
rs73119512	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238483	1.00[ASN][1000 genomes]
rs732860	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8117589	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3342568	chr20:29803909-29834289	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
2	esv3362807	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
3	esv3392375	chr20:29803909-29834289	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3412704	chr20:29803909-29834289	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	esv3445374	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
6	esv3451819	chr20:29803909-29834389	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv964448	chr20:29803909-29857200	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv10142	chr20:29804062-29833443	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv585876	chr20:29804208-29812781	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv585877	chr20:29804208-29813278	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv585878	chr20:29804208-29814380	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
12	nsv585879	chr20:29804208-29816499	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
13	nsv585880	chr20:29804208-29819916	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv585881	chr20:29804208-29820738	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv585882	chr20:29804208-29822325	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv585883	chr20:29804208-29823205	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv585884	chr20:29804208-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
18	nsv585885	chr20:29804208-29830347	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
19	nsv585886	chr20:29804208-29832022	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv585887	chr20:29804208-29833609	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv585888	chr20:29804208-29844859	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	esv1806248	chr20:29804293-29812781	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv585889	chr20:29804293-29813278	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv585890	chr20:29804293-29814380	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv585891	chr20:29804293-29816499	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
26	esv1841241	chr20:29804293-29819916	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
27	nsv585892	chr20:29804293-29819916	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
28	nsv585893	chr20:29804293-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
29	nsv585894	chr20:29804293-29830347	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
30	esv1805772	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
31	esv1814224	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
32	esv1819293	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
33	esv1838661	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
34	nsv585895	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
35	esv1800744	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
36	esv1806005	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	esv1809844	chr20:29804293-29860684	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
38	esv1821656	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
39	esv1829940	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
40	esv1836734	chr20:29804293-29860684	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
41	esv1839077	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
42	esv1850349	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	esv994391	chr20:29804598-29832573	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
44	esv3525254	chr20:29804605-29807960	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
45	esv3525255	chr20:29804605-29807960	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
46	nsv585896	chr20:29805100-29816499	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
47	nsv585897	chr20:29805100-29824391	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
48	nsv585898	chr20:29805100-29830347	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
49	nsv585899	chr20:29805100-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
50	esv3360059	chr20:29805788-29806135	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29806800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
2	chr20:29803800-29807000	ZNF genes & repeats	Colonic Mucosa	Colon
3	chr20:29803800-29809400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:29803800-29809800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr20:29803800-29809800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
6	chr20:29803800-29811000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr20:29803800-29811200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:29803800-29811200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
9	chr20:29803800-29814000	ZNF genes & repeats	Fetal Heart	heart
10	chr20:29803800-29818600	ZNF genes & repeats	Brain Angular Gyrus	brain
11	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
14	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
16	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
17	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
18	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
19	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
23	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
24	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
27	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
28	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
31	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
32	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
37	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr20:29804000-29807000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
39	chr20:29804000-29809200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr20:29804000-29810600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
41	chr20:29804000-29814000	ZNF genes & repeats	GM12878-XiMat	blood
42	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
43	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
44	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
45	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
46	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
47	chr20:29804000-29833400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
48	chr20:29804000-29833400	ZNF genes & repeats	Fetal Brain Male	brain
49	chr20:29804000-29833400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
50	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links