Variant report

Variant	rs60582517
Chromosome Location	chr11:101135213-101135214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501976	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17096407	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17096411	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17096433	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17096434	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1943753	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2187363	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4754009	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60995659	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73583830	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73583833	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101126400-101169400	Weak transcription	Ovary	ovary
2	chr11:101134800-101135600	Enhancers	Colon Smooth Muscle	Colon
3	chr11:101135200-101135400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr11:101135200-101135800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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