Variant report

Variant	rs60582855
Chromosome Location	chr19:44365400-44365401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1124737	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16976860	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16976861	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16976863	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16976889	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17449078	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56870791	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57500373	0.81[AMR][1000 genomes]
rs59935787	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61022716	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61277064	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61528694	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6509121	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7254625	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs766959	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8103693	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8105412	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8106317	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8107364	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8108832	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458710	chr19:44339960-44410846	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv579853	chr19:44339960-44410846	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv524460	chr19:44352688-44372015	Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv912108	chr19:44358761-44435167	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv961294	chr19:44359970-44384503	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44335200-44368200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:44335400-44366600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44358000-44368800	ZNF genes & repeats	Liver	Liver
4	chr19:44358600-44369200	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:44364600-44365400	Active TSS	Right Atrium	heart
6	chr19:44365400-44367600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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