Variant report

Variant	rs60584290
Chromosome Location	chr16:30588210-30588211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30580435..30583086-chr16:30587779..30589882,2	K562	blood:
2	chr16:30579803..30583706-chr16:30587813..30591329,4	MCF-7	breast:
3	chr16:30587166..30589383-chr16:30596291..30598280,2	MCF-7	breast:
4	chr16:30583050..30589314-chr16:30592212..30597849,11	K562	blood:
5	chr16:30580681..30582267-chr16:30587119..30588785,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229809	Chromatin interaction
ENSG00000197162	Chromatin interaction
ENSG00000239791	Chromatin interaction
ENSG00000260167	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11859342	1.00[EUR][1000 genomes]
rs11862680	1.00[EUR][1000 genomes]
rs34007971	1.00[EUR][1000 genomes]
rs34326943	1.00[EUR][1000 genomes]
rs34874849	1.00[EUR][1000 genomes]
rs35512295	1.00[EUR][1000 genomes]
rs35977794	1.00[EUR][1000 genomes]
rs58223373	1.00[EUR][1000 genomes]
rs58223875	1.00[EUR][1000 genomes]
rs60048183	1.00[EUR][1000 genomes]
rs61745791	1.00[EUR][1000 genomes]
rs6565206	1.00[EUR][1000 genomes]
rs7191097	1.00[EUR][1000 genomes]
rs7196067	1.00[EUR][1000 genomes]
rs74015016	1.00[EUR][1000 genomes]
rs74015017	1.00[EUR][1000 genomes]
rs74015019	1.00[EUR][1000 genomes]
rs8044106	1.00[EUR][1000 genomes]
rs8051182	1.00[EUR][1000 genomes]
rs8061986	1.00[EUR][1000 genomes]
rs8062907	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905727	chr16:30564526-30689696	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv542899	chr16:30575260-30612385	Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30583800-30590600	Weak transcription	Left Ventricle	heart
2	chr16:30583800-30592600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:30583800-30593000	Weak transcription	Aorta	Aorta
4	chr16:30583800-30593000	Weak transcription	Esophagus	oesophagus
5	chr16:30584000-30589400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr16:30584000-30589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr16:30584000-30589400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:30584000-30589400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr16:30584000-30589600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr16:30584000-30589600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr16:30584000-30589600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr16:30584000-30589600	Weak transcription	Osteobl	bone
13	chr16:30584000-30589800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr16:30584000-30589800	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:30584000-30589800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr16:30584000-30590200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr16:30584000-30590200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:30584000-30590200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:30584000-30590200	Weak transcription	Brain Substantia Nigra	brain
20	chr16:30584000-30590200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr16:30584000-30590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:30584000-30590400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr16:30584000-30590400	Weak transcription	HSMMtube	muscle
24	chr16:30584000-30590600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr16:30584000-30592600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr16:30584000-30592600	Weak transcription	Lung	lung
27	chr16:30584000-30592800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:30584000-30592800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:30584000-30592800	Weak transcription	NHEK	skin
30	chr16:30584000-30593000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr16:30584000-30593000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr16:30584000-30593000	Weak transcription	Right Ventricle	heart
33	chr16:30584000-30593000	Weak transcription	NHLF	lung
34	chr16:30584000-30593200	Weak transcription	Brain Angular Gyrus	brain
35	chr16:30584000-30593800	Weak transcription	Psoas Muscle	Psoas
36	chr16:30584000-30596000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr16:30584000-30596000	Weak transcription	Fetal Kidney	kidney
38	chr16:30584000-30596000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr16:30584000-30596000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr16:30584000-30596000	Weak transcription	NHDF-Ad	bronchial
41	chr16:30584000-30596200	Weak transcription	Right Atrium	heart
42	chr16:30584200-30589200	Weak transcription	Fetal Intestine Large	intestine
43	chr16:30584200-30589200	Weak transcription	Placenta	Placenta
44	chr16:30584200-30589200	Weak transcription	Thymus	Thymus
45	chr16:30584200-30589400	Weak transcription	Brain Anterior Caudate	brain
46	chr16:30584200-30590200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr16:30584200-30590200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr16:30584200-30590200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:30584200-30590200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr16:30584200-30590200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links