Variant report

Variant	rs74015017
Chromosome Location	chr16:30614639-30614640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30609903..30615158-chr16:30618812..30624343,6	K562	blood:
2	chr16:30455855..30458514-chr16:30612885..30615192,2	K562	blood:
3	chr16:30453786..30456421-chr16:30612645..30615636,2	MCF-7	breast:
4	chr16:30597713..30600589-chr16:30612851..30615692,2	MCF-7	breast:
5	chr16:30613506..30615441-chr16:30627637..30629145,2	MCF-7	breast:
6	chr16:30605269..30606906-chr16:30613620..30615175,2	K562	blood:
7	chr16:30609710..30612542-chr16:30613790..30615801,2	K562	blood:

Variant related genes	Relation type
ENSG00000179918	Chromatin interaction
ENSG00000156853	Chromatin interaction
ENSG00000261588	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11859342	1.00[EUR][1000 genomes]
rs11862680	1.00[EUR][1000 genomes]
rs11865829	1.00[EUR][1000 genomes]
rs34007971	1.00[EUR][1000 genomes]
rs34326943	1.00[EUR][1000 genomes]
rs34874849	1.00[EUR][1000 genomes]
rs35512295	1.00[EUR][1000 genomes]
rs35977794	1.00[EUR][1000 genomes]
rs58223373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58223875	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59391245	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60048183	1.00[EUR][1000 genomes]
rs60584290	1.00[EUR][1000 genomes]
rs61745791	1.00[EUR][1000 genomes]
rs6420450	1.00[EUR][1000 genomes]
rs6565206	1.00[EUR][1000 genomes]
rs7190535	1.00[AMR][1000 genomes]
rs7191097	1.00[EUR][1000 genomes]
rs7196067	1.00[EUR][1000 genomes]
rs74015016	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74015019	1.00[EUR][1000 genomes]
rs8044106	1.00[EUR][1000 genomes]
rs8051182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061986	1.00[EUR][1000 genomes]
rs8062907	1.00[EUR][1000 genomes]
rs9921376	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905727	chr16:30564526-30689696	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30597800-30614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr16:30597800-30615000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:30597800-30615000	Weak transcription	Fetal Kidney	kidney
4	chr16:30597800-30615200	Weak transcription	Esophagus	oesophagus
5	chr16:30597800-30615600	Weak transcription	Right Atrium	heart
6	chr16:30597800-30615600	Weak transcription	Small Intestine	intestine
7	chr16:30598000-30615400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:30598400-30620000	Weak transcription	Fetal Brain Male	brain
9	chr16:30598400-30620200	Weak transcription	HUVEC	blood vessel
10	chr16:30598600-30619000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:30599600-30614800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr16:30599600-30615000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr16:30606000-30620600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr16:30608800-30615800	Weak transcription	Psoas Muscle	Psoas
15	chr16:30609400-30614800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr16:30609600-30614800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr16:30609600-30614800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr16:30609600-30614800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr16:30609800-30615000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr16:30609800-30620200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr16:30610000-30614800	Weak transcription	K562	blood
22	chr16:30610000-30620000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr16:30610000-30620200	Weak transcription	Stomach Mucosa	stomach
24	chr16:30612400-30620400	Weak transcription	Primary B cells from cord blood	blood
25	chr16:30612800-30614800	Weak transcription	A549	lung
26	chr16:30613000-30615000	Strong transcription	Brain Hippocampus Middle	brain
27	chr16:30613000-30615200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr16:30613200-30615000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr16:30613200-30615400	Genic enhancers	Fetal Muscle Leg	muscle
30	chr16:30613200-30615600	Genic enhancers	Duodenum Mucosa	Duodenum
31	chr16:30613200-30618200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr16:30613200-30619000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr16:30613200-30619200	Strong transcription	Dnd41	blood
34	chr16:30613200-30619600	Strong transcription	Thymus	Thymus
35	chr16:30613200-30619800	Strong transcription	Fetal Thymus	thymus
36	chr16:30613200-30620400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr16:30613400-30615000	Strong transcription	Spleen	Spleen
38	chr16:30613400-30615200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr16:30613400-30616800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr16:30613400-30617600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr16:30613400-30617800	Strong transcription	Primary T cells from cord blood	blood
42	chr16:30613400-30618000	Strong transcription	Brain Germinal Matrix	brain
43	chr16:30613400-30618000	Strong transcription	Fetal Brain Female	brain
44	chr16:30613400-30618400	Strong transcription	Brain Anterior Caudate	brain
45	chr16:30613400-30620200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:30613400-30620200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr16:30613600-30614800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr16:30613600-30614800	Strong transcription	Fetal Intestine Small	intestine
49	chr16:30613600-30615000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr16:30613600-30615800	Genic enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links