Variant report

Variant	rs60584468
Chromosome Location	chr3:112367326-112367327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112357844..112361438-chr3:112364098..112368101,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1249881	1.00[AMR][1000 genomes]
rs16859905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59902026	0.83[AFR][1000 genomes]
rs6438090	1.00[AMR][1000 genomes]
rs6778113	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6792371	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611993	1.00[AMR][1000 genomes]
rs9866211	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112360800-112367800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:112362400-112367600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:112362400-112367800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:112362800-112367800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:112363400-112373600	Weak transcription	Esophagus	oesophagus
6	chr3:112363800-112368000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:112364600-112372800	Enhancers	Osteobl	bone
8	chr3:112365000-112370600	Enhancers	NHLF	lung
9	chr3:112365200-112367400	Enhancers	HMEC	breast
10	chr3:112365200-112368200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:112365200-112368400	Enhancers	Placenta	Placenta
12	chr3:112365200-112369600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:112365200-112370600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:112365400-112368200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:112366000-112367800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:112366400-112367800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:112366400-112372000	Weak transcription	Fetal Lung	lung
18	chr3:112366400-112372400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:112366400-112372600	Enhancers	NHDF-Ad	bronchial
20	chr3:112366400-112373800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:112366600-112367800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:112366600-112369200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:112366600-112370200	Enhancers	A549	lung
24	chr3:112366800-112368000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:112367000-112367800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:112367000-112367800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:112367000-112368000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:112367000-112368000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:112367000-112368000	Enhancers	HSMMtube	muscle
30	chr3:112367000-112368000	Weak transcription	NHEK	skin
31	chr3:112367000-112368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:112367000-112368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:112367000-112369400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:112367000-112369400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:112367000-112371800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr3:112367000-112371800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr3:112367000-112373800	Enhancers	HSMM	muscle
38	chr3:112367200-112367600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:112367200-112367600	Weak transcription	NH-A	brain
40	chr3:112367200-112369400	Weak transcription	Adipose Nuclei	Adipose

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