Variant report

Variant	rs6438090
Chromosome Location	chr3:112384687-112384688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1249881	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16859905	1.00[ASW][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs60584468	1.00[AMR][1000 genomes]
rs6778113	1.00[AMR][1000 genomes]
rs6792371	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7611993	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9866211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112375000-112389000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112383800-112384800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:112383800-112384800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr3:112383800-112384800	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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