Variant report

Variant	rs60588582
Chromosome Location	chr4:6769505-6769506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6761834..6766024-chr4:6766286..6770008,4	MCF-7	breast:
2	chr4:6746698..6749224-chr4:6768313..6771261,2	MCF-7	breast:
3	chr4:6720035..6721877-chr4:6768594..6770482,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73078521	0.90[AFR][1000 genomes]
rs73213629	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213630	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213634	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73213636	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213637	0.92[EUR][1000 genomes]
rs73213638	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6763600-6773000	Enhancers	Fetal Thymus	thymus
2	chr4:6765600-6770000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:6765600-6771000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:6765600-6781400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:6765800-6773800	Weak transcription	Hela-S3	cervix
6	chr4:6767600-6773200	Enhancers	Fetal Intestine Small	intestine
7	chr4:6767800-6770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:6767800-6770800	Enhancers	Spleen	Spleen
9	chr4:6767800-6776200	Enhancers	Duodenum Mucosa	Duodenum
10	chr4:6768200-6769600	Weak transcription	Primary T cells from cord blood	blood
11	chr4:6768200-6770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:6768400-6770600	Weak transcription	Small Intestine	intestine
13	chr4:6768400-6770800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:6768600-6771000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:6768800-6772800	Enhancers	Fetal Intestine Large	intestine
16	chr4:6769000-6770200	Enhancers	Colonic Mucosa	Colon
17	chr4:6769000-6770400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr4:6769000-6770600	Enhancers	Stomach Mucosa	stomach
19	chr4:6769000-6770800	Enhancers	HMEC	breast
20	chr4:6769000-6771400	Flanking Active TSS	HepG2	liver
21	chr4:6769200-6769800	Enhancers	Placenta	Placenta
22	chr4:6769200-6769800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
23	chr4:6769200-6770400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:6769200-6770600	Enhancers	Fetal Muscle Leg	muscle
25	chr4:6769200-6770800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:6769200-6770800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:6769200-6770800	Enhancers	K562	blood
28	chr4:6769200-6771200	Enhancers	Gastric	stomach
29	chr4:6769200-6771200	Enhancers	HSMMtube	muscle
30	chr4:6769200-6772000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:6769200-6772200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr4:6769200-6772400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr4:6769400-6769600	Enhancers	Fetal Heart	heart
34	chr4:6769400-6769600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr4:6769400-6769800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr4:6769400-6769800	Flanking Active TSS	NHEK	skin
37	chr4:6769400-6770000	Weak transcription	GM12878-XiMat	blood
38	chr4:6769400-6770400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:6769400-6770400	Enhancers	NHLF	lung
40	chr4:6769400-6770600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:6769400-6770600	Enhancers	Esophagus	oesophagus
42	chr4:6769400-6770600	Enhancers	Pancreas	Pancrea
43	chr4:6769400-6770600	Enhancers	NH-A	brain
44	chr4:6769400-6770800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:6769400-6770800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:6769400-6770800	Enhancers	Muscle Satellite Cultured Cells	--
47	chr4:6769400-6770800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:6769400-6770800	Enhancers	Right Atrium	heart
49	chr4:6769400-6770800	Enhancers	A549	lung
50	chr4:6769400-6771200	Enhancers	Primary monocytes fromperipheralblood	blood

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