Variant report

Variant	rs73213629
Chromosome Location	chr4:6765876-6765877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6753877..6756919-chr4:6761128..6766161,4	K562	blood:
2	chr4:6749995..6753611-chr4:6763962..6766629,4	K562	blood:
3	chr4:6762561..6768449-chr4:6782490..6785602,9	MCF-7	breast:
4	chr4:6751295..6753260-chr4:6765324..6767175,2	MCF-7	breast:
5	chr4:6721712..6722623-chr4:6765029..6765968,5	K562	blood:
6	chr4:6761834..6766024-chr4:6766286..6770008,4	MCF-7	breast:
7	chr4:6721706..6722639-chr4:6765103..6765980,2	MCF-7	breast:
8	chr4:6759340..6762124-chr4:6764165..6768519,5	K562	blood:
9	chr4:6754218..6757243-chr4:6763885..6768388,4	MCF-7	breast:
10	chr4:6720704..6722500-chr4:6765323..6766862,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60588582	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73213636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213637	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73213638	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
2	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
3	chr4:6759600-6766600	Enhancers	Placenta	Placenta
4	chr4:6762600-6766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:6763000-6766200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:6763600-6769200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:6763600-6773000	Enhancers	Fetal Thymus	thymus
8	chr4:6764000-6766000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:6764000-6766200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:6764200-6767800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:6764200-6769200	Weak transcription	HSMMtube	muscle
12	chr4:6764600-6767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:6764800-6766000	Enhancers	K562	blood
14	chr4:6765000-6766000	Enhancers	HepG2	liver
15	chr4:6765200-6766200	Enhancers	NHEK	skin
16	chr4:6765600-6766200	Enhancers	HMEC	breast
17	chr4:6765600-6767800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:6765600-6769000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:6765600-6769400	Weak transcription	Esophagus	oesophagus
20	chr4:6765600-6769400	Weak transcription	A549	lung
21	chr4:6765600-6770000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:6765600-6771000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:6765600-6781400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:6765800-6768400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:6765800-6773800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links