Variant report

Variant	rs60617338
Chromosome Location	chr10:49762582-49762583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49761230..49763552-chr10:49773026..49775938,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1075811	1.00[ASN][1000 genomes]
rs1373786	1.00[ASN][1000 genomes]
rs1373792	1.00[ASN][1000 genomes]
rs1445167	1.00[ASN][1000 genomes]
rs1838577	1.00[ASN][1000 genomes]
rs1838578	1.00[ASN][1000 genomes]
rs2120909	1.00[ASN][1000 genomes]
rs4593967	0.81[AMR][1000 genomes]
rs4838424	1.00[ASN][1000 genomes]
rs4838624	1.00[ASN][1000 genomes]
rs4838625	1.00[ASN][1000 genomes]
rs56117471	1.00[ASN][1000 genomes]
rs57675373	1.00[ASN][1000 genomes]
rs57736095	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57752920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58254275	1.00[ASN][1000 genomes]
rs59556761	1.00[ASN][1000 genomes]
rs60932029	1.00[ASN][1000 genomes]
rs7085095	1.00[ASN][1000 genomes]
rs73300223	1.00[ASN][1000 genomes]
rs73300252	1.00[ASN][1000 genomes]
rs7909968	1.00[ASN][1000 genomes]
rs7911853	1.00[ASN][1000 genomes]
rs935264	1.00[ASN][1000 genomes]
rs935291	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
2	chr10:49751200-49771600	Weak transcription	Pancreas	Pancrea
3	chr10:49753400-49764400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
5	chr10:49759200-49770400	Weak transcription	NH-A	brain
6	chr10:49759400-49763800	Enhancers	Brain Substantia Nigra	brain
7	chr10:49759800-49763600	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:49759800-49764200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr10:49760200-49764600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:49760800-49765000	Strong transcription	NHLF	lung
11	chr10:49760800-49765400	Strong transcription	HSMM	muscle
12	chr10:49760800-49765600	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr10:49760800-49768800	Weak transcription	Ovary	ovary
14	chr10:49761000-49764800	Strong transcription	Osteobl	bone
15	chr10:49761000-49765400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:49761400-49762800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:49761400-49764400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:49761400-49765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
20	chr10:49761800-49762800	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:49761800-49763600	Enhancers	Colon Smooth Muscle	Colon
22	chr10:49761800-49765400	Strong transcription	NHDF-Ad	bronchial
23	chr10:49762000-49762600	Enhancers	Brain Angular Gyrus	brain
24	chr10:49762000-49763600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:49762000-49764400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:49762000-49764600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:49762000-49765600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:49762200-49762800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:49762200-49762800	Strong transcription	HMEC	breast
30	chr10:49762200-49763400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:49762200-49763600	Enhancers	Fetal Muscle Leg	muscle
32	chr10:49762400-49762600	Enhancers	Right Atrium	heart
33	chr10:49762400-49762600	Enhancers	Right Ventricle	heart
34	chr10:49762400-49762600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:49762400-49762800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:49762400-49763000	Enhancers	Fetal Stomach	stomach
37	chr10:49762400-49763200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:49762400-49763800	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links