Variant report

Variant	rs935291
Chromosome Location	chr10:49786443-49786444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49784932..49786991-chr10:49803496..49805915,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10491036	1.00[JPT][hapmap]
rs10491037	1.00[JPT][hapmap]
rs10491038	1.00[JPT][hapmap]
rs1075811	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593803	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1345107	0.83[GIH][hapmap]
rs1373786	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1373792	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445167	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17010841	1.00[JPT][hapmap]
rs17010845	1.00[JPT][hapmap]
rs1814474	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1838577	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1838578	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2120909	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2377517	0.83[GIH][hapmap]
rs2377518	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2377519	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2377520	0.89[EUR][1000 genomes]
rs2889659	0.94[CEU][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs3843000	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs3843001	1.00[JPT][hapmap]
rs3844200	1.00[JPT][hapmap]
rs3851549	1.00[JPT][hapmap]
rs3851551	0.89[EUR][1000 genomes]
rs4282942	1.00[JPT][hapmap]
rs4320911	1.00[JPT][hapmap]
rs4572084	0.89[EUR][1000 genomes]
rs4838424	1.00[ASN][1000 genomes]
rs4838427	1.00[JPT][hapmap]
rs4838624	1.00[ASN][1000 genomes]
rs4838625	1.00[ASN][1000 genomes]
rs4838628	1.00[JPT][hapmap]
rs4838629	1.00[JPT][hapmap]
rs56117471	1.00[ASN][1000 genomes]
rs57675373	1.00[ASN][1000 genomes]
rs57736095	1.00[ASN][1000 genomes]
rs57752920	1.00[ASN][1000 genomes]
rs58254275	1.00[ASN][1000 genomes]
rs59556761	1.00[ASN][1000 genomes]
rs60617338	1.00[ASN][1000 genomes]
rs60932029	1.00[ASN][1000 genomes]
rs7075804	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs7085095	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73300223	1.00[ASN][1000 genomes]
rs73300252	1.00[ASN][1000 genomes]
rs7909968	0.88[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911853	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs870353	1.00[JPT][hapmap]
rs935264	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs935285	1.00[JPT][hapmap]
rs935287	1.00[JPT][hapmap]
rs935288	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv550815	chr10:49774633-49794481	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv550816	chr10:49782417-49794481	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49773000-49787400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:49773200-49787800	Weak transcription	Brain Angular Gyrus	brain
3	chr10:49773400-49786600	Strong transcription	HSMM	muscle
4	chr10:49777000-49787400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:49777400-49787400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:49779400-49788000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:49780800-49787200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:49781200-49786800	Strong transcription	NH-A	brain
9	chr10:49781200-49787000	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr10:49782800-49787400	Weak transcription	Fetal Thymus	thymus
11	chr10:49782800-49790200	Weak transcription	Aorta	Aorta
12	chr10:49783000-49786800	Weak transcription	HSMMtube	muscle
13	chr10:49783000-49787200	Weak transcription	HMEC	breast
14	chr10:49783000-49787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:49783000-49788400	Enhancers	Primary B cells from cord blood	blood
16	chr10:49783200-49787000	Enhancers	GM12878-XiMat	blood
17	chr10:49783200-49787800	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:49783200-49787800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:49783400-49787400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:49783800-49787400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:49784000-49788000	Weak transcription	HUVEC	blood vessel
22	chr10:49784400-49787600	Weak transcription	Brain Anterior Caudate	brain
23	chr10:49784400-49787600	Weak transcription	Placenta	Placenta
24	chr10:49785400-49787400	Weak transcription	Right Ventricle	heart
25	chr10:49785600-49786600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:49785800-49787000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:49786200-49786600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:49786200-49786600	Enhancers	Brain Hippocampus Middle	brain
29	chr10:49786200-49786800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:49786200-49786800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:49786200-49786800	Strong transcription	NHDF-Ad	bronchial
32	chr10:49786200-49787200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:49786200-49787800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:49786200-49787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr10:49786200-49788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:49786200-49788200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:49786200-49788200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:49786200-49788400	Genic enhancers	NHLF	lung
39	chr10:49786200-49789000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:49786200-49789000	Enhancers	Colon Smooth Muscle	Colon
41	chr10:49786200-49792800	Enhancers	Brain Substantia Nigra	brain
42	chr10:49786400-49786600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:49786400-49786600	Enhancers	Adipose Nuclei	Adipose
44	chr10:49786400-49787000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:49786400-49787400	Weak transcription	Fetal Stomach	stomach
46	chr10:49786400-49787600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:49786400-49787600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:49786400-49787600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr10:49786400-49787800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr10:49786400-49788200	Genic enhancers	Osteobl	bone

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