Variant report

Variant	rs60628200
Chromosome Location	chr10:98035333-98035334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98031417..98034385-chr10:98034757..98037553,2	MCF-7	breast:

rs_ID	r²[population]
rs10882764	1.00[EUR][1000 genomes]
rs11188685	1.00[EUR][1000 genomes]
rs12249494	1.00[EUR][1000 genomes]
rs12260882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28576546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57764586	1.00[EUR][1000 genomes]
rs73318815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73318819	1.00[EUR][1000 genomes]
rs73318823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73318827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900787	1.00[EUR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98031400-98035600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:98031400-98035600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:98031600-98035600	Weak transcription	Dnd41	blood
4	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:98032600-98035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:98032600-98035400	Weak transcription	Small Intestine	intestine
7	chr10:98032800-98035600	Weak transcription	Esophagus	oesophagus
8	chr10:98032800-98035600	Weak transcription	Fetal Kidney	kidney
9	chr10:98032800-98035600	Weak transcription	Gastric	stomach
10	chr10:98032800-98035600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:98033000-98035800	Weak transcription	Spleen	Spleen
12	chr10:98033000-98036200	Weak transcription	Colonic Mucosa	Colon
13	chr10:98033200-98035400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:98033200-98035400	Weak transcription	NHEK	skin
15	chr10:98033200-98035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:98033200-98035600	Weak transcription	Fetal Lung	lung
17	chr10:98033200-98035600	Weak transcription	Stomach Mucosa	stomach
18	chr10:98033400-98035400	Weak transcription	Adipose Nuclei	Adipose
19	chr10:98033400-98035400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:98033400-98035400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:98033400-98035800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:98033400-98037800	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:98033600-98035600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:98033600-98037400	Enhancers	Primary B cells from cord blood	blood
25	chr10:98034200-98035600	Weak transcription	Fetal Intestine Large	intestine
26	chr10:98034200-98042200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:98034400-98036400	Enhancers	GM12878-XiMat	blood
28	chr10:98034600-98036400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr10:98035200-98036400	Enhancers	Liver	Liver
30	chr10:98035200-98036400	Enhancers	Left Ventricle	heart
31	chr10:98035200-98036400	Enhancers	Right Ventricle	heart
32	chr10:98035200-98036600	Enhancers	Pancreas	Pancrea
33	chr10:98035200-98037400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:98035200-98037400	Enhancers	HMEC	breast
35	chr10:98035200-98037600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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