Variant report

Variant	rs606336
Chromosome Location	chr3:43100127-43100128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13061038	0.87[ASN][1000 genomes]
rs13095711	0.93[ASN][1000 genomes]
rs2280565	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2936817	0.90[ASN][1000 genomes]
rs34970115	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35339908	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs473467	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477594	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs496436	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs504973	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs536119	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56009835	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs643663	0.90[ASN][1000 genomes]
rs648273	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs658958	0.90[ASN][1000 genomes]
rs660446	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs697327	0.88[ASN][1000 genomes]
rs870238	0.85[ASN][1000 genomes]
rs9882262	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43092200-43101000	Weak transcription	Pancreas	Pancrea
2	chr3:43092800-43117800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:43093400-43120200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:43094200-43104200	Weak transcription	Gastric	stomach
5	chr3:43094400-43101400	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:43094400-43101800	Weak transcription	Placenta	Placenta
7	chr3:43094400-43114800	Weak transcription	Brain Anterior Caudate	brain
8	chr3:43095000-43101000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:43095000-43114800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:43095800-43101000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:43095800-43104400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:43096200-43121200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:43096800-43100200	Strong transcription	Liver	Liver
14	chr3:43096800-43102600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43097200-43104600	Weak transcription	Brain Substantia Nigra	brain
16	chr3:43097600-43101000	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:43098000-43101200	Weak transcription	Fetal Stomach	stomach
18	chr3:43098200-43101000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:43098400-43101000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:43098800-43104200	Weak transcription	Ovary	ovary
21	chr3:43099200-43101000	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links