Variant report

Variant	rs643663
Chromosome Location	chr3:43072707-43072708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43062963..43065859-chr3:43071110..43073966,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13061038	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13095711	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280565	0.84[ASN][1000 genomes]
rs2936817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34970115	0.82[ASN][1000 genomes]
rs35339908	0.86[ASN][1000 genomes]
rs3732856	0.87[EUR][1000 genomes]
rs473467	0.84[ASN][1000 genomes]
rs476336	0.90[EUR][1000 genomes]
rs477594	0.85[ASN][1000 genomes]
rs496436	0.95[ASN][1000 genomes]
rs504973	0.84[ASN][1000 genomes]
rs509527	0.90[EUR][1000 genomes]
rs517650	0.82[EUR][1000 genomes]
rs536119	0.84[ASN][1000 genomes]
rs536572	0.90[EUR][1000 genomes]
rs541007	0.90[EUR][1000 genomes]
rs56009835	0.95[ASN][1000 genomes]
rs565521	0.89[EUR][1000 genomes]
rs590899	0.90[EUR][1000 genomes]
rs606336	0.90[ASN][1000 genomes]
rs606724	0.90[EUR][1000 genomes]
rs62247065	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs648273	0.95[ASN][1000 genomes]
rs658958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660324	0.90[EUR][1000 genomes]
rs660446	0.86[ASN][1000 genomes]
rs664628	0.90[EUR][1000 genomes]
rs6806706	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs693290	0.90[EUR][1000 genomes]
rs697327	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs704912	0.90[EUR][1000 genomes]
rs834166	0.81[EUR][1000 genomes]
rs834188	0.89[EUR][1000 genomes]
rs834191	0.90[EUR][1000 genomes]
rs870238	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9311333	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9882262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43053600-43073200	Weak transcription	Right Atrium	heart
2	chr3:43059600-43074400	Weak transcription	Lung	lung
3	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
4	chr3:43061000-43080200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:43061800-43073000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:43063000-43077400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:43063600-43084800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:43064000-43077800	Weak transcription	Brain Substantia Nigra	brain
9	chr3:43065400-43084400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:43067400-43076200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:43067600-43084000	Weak transcription	Aorta	Aorta
12	chr3:43067800-43074400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:43068200-43076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:43070600-43084800	Weak transcription	Esophagus	oesophagus
15	chr3:43071000-43072800	Weak transcription	Ovary	ovary
16	chr3:43071000-43073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:43071200-43073000	Weak transcription	Gastric	stomach
18	chr3:43071200-43073800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:43071600-43073200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:43072000-43072800	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:43072000-43073400	Enhancers	Fetal Intestine Large	intestine
22	chr3:43072200-43073000	Enhancers	Fetal Intestine Small	intestine
23	chr3:43072200-43076600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:43072400-43072800	Weak transcription	Liver	Liver
25	chr3:43072400-43073400	Enhancers	Placenta	Placenta
26	chr3:43072400-43073600	Enhancers	Adipose Nuclei	Adipose
27	chr3:43072600-43073000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr3:43072600-43073200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:43072600-43073200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr3:43072600-43073400	Enhancers	Colon Smooth Muscle	Colon
31	chr3:43072600-43073400	Enhancers	Stomach Mucosa	stomach
32	chr3:43072600-43073600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:43072600-43073600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr3:43072600-43073800	Enhancers	Fetal Muscle Leg	muscle
35	chr3:43072600-43073800	Enhancers	Fetal Stomach	stomach

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