Variant report

Variant	rs60638003
Chromosome Location	chr1:185451926-185451927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12566536	1.00[EUR][1000 genomes]
rs16824166	0.90[AFR][1000 genomes]
rs16824178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185426200-185453000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185447600-185452600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:185447600-185452800	Weak transcription	Brain Germinal Matrix	brain
4	chr1:185447800-185452400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:185447800-185452800	Weak transcription	Fetal Brain Female	brain
6	chr1:185448000-185453200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:185448200-185452800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:185448200-185458000	Weak transcription	Stomach Mucosa	stomach
9	chr1:185449200-185452800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:185449200-185455000	Weak transcription	Fetal Intestine Small	intestine
11	chr1:185449400-185452800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:185449400-185452800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:185449400-185452800	Weak transcription	Fetal Intestine Large	intestine
14	chr1:185449400-185453200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:185449400-185457600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:185449800-185452800	Weak transcription	Psoas Muscle	Psoas
17	chr1:185449800-185453000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:185450000-185452600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:185450000-185452800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:185450000-185452800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:185450000-185452800	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:185450200-185457400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:185450400-185452400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:185450600-185452800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:185451400-185453000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:185451400-185457200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:185451600-185453600	Enhancers	Liver	Liver
28	chr1:185451800-185458400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links