Variant report

Variant	rs12566536
Chromosome Location	chr1:185465906-185465907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10911710	1.00[AFR][1000 genomes]
rs12410218	1.00[AFR][1000 genomes]
rs16824178	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3955251	0.84[ASN][1000 genomes]
rs56259058	0.92[ASN][1000 genomes]
rs58928168	0.84[ASN][1000 genomes]
rs60026340	0.86[ASN][1000 genomes]
rs60638003	1.00[EUR][1000 genomes]
rs60778683	0.84[ASN][1000 genomes]
rs72726019	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185464600-185468800	Weak transcription	HUVEC	blood vessel
2	chr1:185465200-185469000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:185465800-185466000	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links