Variant report

Variant	rs3955251
Chromosome Location	chr1:185494175-185494176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11803475	0.81[AMR][1000 genomes]
rs12566536	0.84[ASN][1000 genomes]
rs55668166	0.81[AMR][1000 genomes]
rs55722516	0.90[AMR][1000 genomes]
rs55749359	0.90[AMR][1000 genomes]
rs56259058	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57855737	0.81[AMR][1000 genomes]
rs58928168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60026340	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60416788	0.90[AMR][1000 genomes]
rs60778683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61588056	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185490400-185497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185490600-185495600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:185490600-185497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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