Variant report

Variant	rs55668166
Chromosome Location	chr1:185468600-185468601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10159387	1.00[EUR][1000 genomes]
rs11803475	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12061799	1.00[EUR][1000 genomes]
rs3955251	0.81[AMR][1000 genomes]
rs55722516	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55749359	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56982777	1.00[EUR][1000 genomes]
rs57855737	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58168300	1.00[EUR][1000 genomes]
rs58963489	1.00[EUR][1000 genomes]
rs59444721	1.00[EUR][1000 genomes]
rs60026340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60416788	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61588056	0.91[AMR][1000 genomes]
rs6673367	1.00[EUR][1000 genomes]
rs73052265	1.00[EUR][1000 genomes]
rs73052267	1.00[EUR][1000 genomes]
rs73052272	1.00[EUR][1000 genomes]
rs7550745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185464600-185468800	Weak transcription	HUVEC	blood vessel
2	chr1:185465200-185469000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:185468400-185469400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:185468600-185468800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:185468600-185468800	Enhancers	HSMMtube	muscle
6	chr1:185468600-185469600	Enhancers	NH-A	brain
7	chr1:185468600-185470000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:185468600-185470000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:185468600-185470000	Enhancers	HMEC	breast
10	chr1:185468600-185470000	Enhancers	HSMM	muscle
11	chr1:185468600-185470200	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links